Directories
¶
| Path | Synopsis |
|---|---|
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Package api provides HTTP handlers for the srake REST API, exposing search, metadata retrieval, statistics, and export endpoints.
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Package api provides HTTP handlers for the srake REST API, exposing search, metadata retrieval, statistics, and export endpoints. |
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Package converter provides accession ID conversion between SRA, GEO, BioProject, and BioSample identifier systems using local database lookups and NCBI E-utilities as a fallback.
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Package converter provides accession ID conversion between SRA, GEO, BioProject, and BioSample identifier systems using local database lookups and NCBI E-utilities as a fallback. |
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Package database provides SQLite-backed storage for SRA metadata records including studies, experiments, samples, runs, submissions, and analyses.
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Package database provides SQLite-backed storage for SRA metadata records including studies, experiments, samples, runs, submissions, and analyses. |
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Package errors provides error handling utilities for SRAKE.
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Package errors provides error handling utilities for SRAKE. |
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Package export handles exporting SRA metadata from the internal database into SRAdb-compatible SQLite database files, with optional gzip compression.
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Package export handles exporting SRA metadata from the internal database into SRAdb-compatible SQLite database files, with optional gzip compression. |
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Package processor provides streaming ingestion of SRA metadata from tar.gz archives, supporting both HTTP URLs and local files.
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Package processor provides streaming ingestion of SRA metadata from tar.gz archives, supporting both HTTP URLs and local files. |
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Package query provides a unified search engine that combines full-text (Bleve), structured metadata (SQLite), and vector similarity search into a single interface.
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Package query provides a unified search engine that combines full-text (Bleve), structured metadata (SQLite), and vector similarity search into a single interface. |
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Package service provides high-level business logic for querying and managing SRA metadata, including study, experiment, sample, and run access.
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Package service provides high-level business logic for querying and managing SRA metadata, including study, experiment, sample, and run access. |
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Package testutil provides testing utilities for SRAKE packages.
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Package testutil provides testing utilities for SRAKE packages. |
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