cli

package

v0.12.4 Latest Latest Go to latest Published: Apr 22, 2026 License: MIT Imports: 31 Imported by: 0

Documentation ¶

Index ¶

Variables
func NewRootCmd(version string) *cobra.Command
type AssemblyDownloadConfig

Constants ¶

This section is empty.

Variables ¶

View Source

var RootCmd = &cobra.Command{
	Use:          "atb",
	Short:        "Query and download AllTheBacteria genomes",
	SilenceUsage: true,
}

RootCmd is the base command for atb.

View Source

var (

	// WaitForUpdateCheck is set by PersistentPreRun. Call it before exiting
	// main() to give the background update check time to save state.
	WaitForUpdateCheck func()
)

Functions ¶

func NewRootCmd ¶

func NewRootCmd(version string) *cobra.Command

NewRootCmd creates a fresh root command with its own flag state. Useful for testing to avoid shared global state between test runs.

Types ¶

type AssemblyDownloadConfig ¶ added in v0.10.0

type AssemblyDownloadConfig struct {
	SampleAccessions []string
	OutputDir        string
	Parallel         int
	DryRun           bool
	MaxSamples       int
	Force            bool
	MinFreeSpaceGB   int
	Stderr           io.Writer
}

AssemblyDownloadConfig holds options for downloading genome assemblies.

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