rebase

package

v0.15.5 Latest Latest Go to latest Published: Aug 22, 2021 License: MIT Imports: 3 Imported by: 0

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Repository

github.com/Open-Science-Global/poly

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Documentation ¶

Index ¶

func Export(enzymeMap map[string]Enzyme) []byte
func Parse(file []byte) map[string]Enzyme
func Read(path string) (map[string]Enzyme, error)
type Enzyme

Constants ¶

This section is empty.

Variables ¶

This section is empty.

Functions ¶

func Export ¶

func Export(enzymeMap map[string]Enzyme) []byte

Export returns a json file of the Rebase database

Example ¶

enzymeMap, _ := Read("data/rebase_test.txt")
enzymeJson := Export(enzymeMap)
fmt.Println(string(enzymeJson)[:100])

Output:

{"AaaI":{"name":"AaaI","isoschizomers":["XmaIII","BseX3I","BsoDI","BstZI","EagI","EclXI","Eco52I","S

func Parse ¶

func Parse(file []byte) map[string]Enzyme

Parse parses the Rebase database into a map of enzymes

func Read ¶

func Read(path string) (map[string]Enzyme, error)

Read returns an enzymeMap from a Rebase data dump

Example ¶

enzymeMap, _ := Read("data/rebase_test.txt")
fmt.Println(enzymeMap["AarI"].MicroOrganism)

Output:

Arthrobacter aurescens SS2-322

Types ¶

type Enzyme ¶

type Enzyme struct {
	Name                   string   `json:"name"`
	Isoschizomers          []string `json:"isoschizomers"`
	RecognitionSequence    string   `json:"recognitionSequence"`
	MethylationSite        string   `json:"methylationSite"`
	MicroOrganism          string   `json:"microorganism"`
	Source                 string   `json:"source"`
	CommercialAvailability []string `json:"commercialAvailability"`
	References             string   `json:"references"`
}

Enzyme represents a single enzyme within the Rebase database

Source Files ¶

View all Source files

rebase.go

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