acr

package

v0.2.6 Latest Latest Go to latest Published: Jan 9, 2018 License: GPL-2.0 Imports: 5 Imported by: 0

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Valid go.mod file
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Repository

github.com/benjamincjackson/gotree

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Documentation ¶

Overview ¶

package acr provides data structures & functions for ancestral character reconstruction methods

Index ¶

func AncestralStateIndices(alphabet []string) map[string]int
func ParsimonyAcr(t *tree.Tree, tipCharacters map[string]string) error
type AncestralState

Constants ¶

This section is empty.

Variables ¶

This section is empty.

Functions ¶

func AncestralStateIndices ¶

func AncestralStateIndices(alphabet []string) map[string]int

func ParsimonyAcr ¶

func ParsimonyAcr(t *tree.Tree, tipCharacters map[string]string) error

Will annotate the tree nodes with ancestral characters Computed using parsimony Characters will be located in the comment field of each node at the first index tipCharacters: mapping between tipnames and character state

Types ¶

type AncestralState ¶

type AncestralState []float64

counts or probabilities of each character indices correspond to Alphanumeric order of the alphabet (all possible states)

Source Files ¶

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