omics

type AnnotationImportItem struct {
	Source string `json:"source"`
}

type AnnotationImportItemDetail struct {
	JobStatus string `json:"jobStatus"`
	Source    string `json:"source"`
}

type AnnotationImportJob struct {
	CreationTime         time.Time                    `json:"creationTime"`
	CompletionTime       *time.Time                   `json:"completionTime,omitempty"`
	UpdateTime           time.Time                    `json:"updateTime"`
	FormatOptions        map[string]any               `json:"formatOptions,omitempty"`
	AnnotationFields     map[string]string            `json:"annotationFields,omitempty"`
	ID                   string                       `json:"id"`
	DestinationName      string                       `json:"destinationName"`
	RoleARN              string                       `json:"roleArn"`
	Status               string                       `json:"status"`
	StatusMessage        string                       `json:"statusMessage"`
	VersionName          string                       `json:"versionName"`
	Items                []AnnotationImportItemDetail `json:"items"`
	RunLeftNormalization bool                         `json:"runLeftNormalization,omitempty"`
}

type AnnotationImportJobSummary struct {
	CreationTime         time.Time         `json:"creationTime"`
	CompletionTime       *time.Time        `json:"completionTime,omitempty"`
	UpdateTime           time.Time         `json:"updateTime"`
	AnnotationFields     map[string]string `json:"annotationFields,omitempty"`
	ID                   string            `json:"id"`
	DestinationName      string            `json:"destinationName"`
	RoleARN              string            `json:"roleArn"`
	Status               string            `json:"status"`
	VersionName          string            `json:"versionName"`
	RunLeftNormalization bool              `json:"runLeftNormalization,omitempty"`
}

type AnnotationStore struct {
	CreationTime time.Time         `json:"creationTime"`
	UpdateTime   time.Time         `json:"updateTime"`
	Reference    map[string]any    `json:"reference,omitempty"`
	SseConfig    map[string]any    `json:"sseConfig,omitempty"`
	StoreOptions map[string]any    `json:"storeOptions,omitempty"`
	Tags         map[string]string `json:"tags"`
	StoreArn     string            `json:"storeArn"`
	ID           string            `json:"id"`
	Name         string            `json:"name"`
	Description  string            `json:"description"`
	StoreFormat  string            `json:"storeFormat"`
	Status       string            `json:"status"`
	// StatusMessage is real GetAnnotationStoreOutput's required
	// "statusMessage" (deserializers.go, GetAnnotationStore/
	// ListAnnotationStores) -- previously absent from this struct entirely,
	// the same gap fixed for import jobs in c41d36cb6 but missed here.
	// Always empty: this backend transitions store status synchronously
	// with no error state to describe.
	StatusMessage string `json:"statusMessage"`
	// NumVersions is real GetAnnotationStoreOutput's required "numVersions"
	// (deserializers.go:6225) -- computed live from annotationVersionsByStore
	// at read time (GetAnnotationStore/ListAnnotationStores), never stored,
	// since a stored counter would drift as versions are added/deleted.
	NumVersions int32 `json:"numVersions"`
	// StoreSizeBytes is real GetAnnotationStoreOutput's required
	// "storeSizeBytes" (deserializers.go:6289). This backend does not track
	// actual stored bytes -- always 0 rather than a fabricated number.
	StoreSizeBytes int64 `json:"storeSizeBytes"`
	// contains filtered or unexported fields
}

type AnnotationStoreSummary struct {
	CreationTime   time.Time      `json:"creationTime"`
	UpdateTime     time.Time      `json:"updateTime"`
	Reference      map[string]any `json:"reference,omitempty"`
	SseConfig      map[string]any `json:"sseConfig,omitempty"`
	StoreArn       string         `json:"storeArn"`
	ID             string         `json:"id"`
	Name           string         `json:"name"`
	Description    string         `json:"description"`
	StoreFormat    string         `json:"storeFormat"`
	Status         string         `json:"status"`
	StatusMessage  string         `json:"statusMessage"`
	StoreSizeBytes int64          `json:"storeSizeBytes"`
}

type AnnotationStoreVersion struct {
	CreationTime time.Time         `json:"creationTime"`
	UpdateTime   time.Time         `json:"updateTime"`
	Tags         map[string]string `json:"tags"`
	VersionArn   string            `json:"versionArn"`
	ID           string            `json:"id"`
	StoreID      string            `json:"storeId"`
	StoreName    string            `json:"name"`
	VersionName  string            `json:"versionName"`
	Description  string            `json:"description"`
	Status       string            `json:"status"`
	// StatusMessage is real GetAnnotationStoreVersionOutput's required
	// "statusMessage" -- previously absent from this struct entirely, the
	// same gap fixed for import jobs in c41d36cb6 but missed here. Always
	// empty: this backend transitions version status synchronously with no
	// error state to describe.
	StatusMessage string `json:"statusMessage"`
	// VersionSizeBytes is real GetAnnotationStoreVersionOutput's required
	// "versionSizeBytes" (deserializers.go:6587). This backend does not
	// track actual stored bytes -- always 0 rather than a fabricated number.
	VersionSizeBytes int64 `json:"versionSizeBytes"`
}

type AnnotationStoreVersionSummary struct {
	CreationTime     time.Time `json:"creationTime"`
	UpdateTime       time.Time `json:"updateTime"`
	VersionArn       string    `json:"versionArn"`
	ID               string    `json:"id"`
	StoreID          string    `json:"storeId"`
	StoreName        string    `json:"name"`
	VersionName      string    `json:"versionName"`
	Description      string    `json:"description"`
	Status           string    `json:"status"`
	StatusMessage    string    `json:"statusMessage"`
	VersionSizeBytes int64     `json:"versionSizeBytes"`
}

type Configuration struct {
	CreationTime      time.Time                       `json:"creationTime"`
	RunConfigurations *ConfigurationRunConfigurations `json:"runConfigurations,omitempty"`
	Tags              map[string]string               `json:"tags,omitempty"`
	Name              string                          `json:"name"`
	Description       string                          `json:"description,omitempty"`
	ARN               string                          `json:"arn,omitempty"`
	UUID              string                          `json:"uuid,omitempty"`
	Status            string                          `json:"status,omitempty"`
}

type ConfigurationDetails struct {
	Arn  string `json:"arn,omitempty"`
	Name string `json:"name,omitempty"`
	UUID string `json:"uuid,omitempty"`
}

type ConfigurationRunConfigurations struct {
	VpcConfig *ConfigurationVpcConfig `json:"vpcConfig,omitempty"`
}

type ConfigurationVpcConfig struct {
	VpcID            string   `json:"vpcId,omitempty"`
	SecurityGroupIDs []string `json:"securityGroupIds,omitempty"`
	SubnetIDs        []string `json:"subnetIds,omitempty"`
}

type CreateAnnotationStoreResponse struct {
	CreationTime time.Time `json:"creationTime"`
	ID           string    `json:"id"`
	Name         string    `json:"name"`
	Status       string    `json:"status"`
	VersionName  string    `json:"versionName"`
}

type CreateWorkflowInput struct {
	ParameterTemplate map[string]WorkflowParameter
	StorageCapacity   *int
	Tags              map[string]string
	Name              string
	Description       string
	DefinitionZip     string
	DefinitionURI     string
	Engine            string
	StorageType       string
}

type CreateWorkflowVersionInput struct {
	ParameterTemplate map[string]WorkflowParameter
	StorageCapacity   *int
	Tags              map[string]string
	WorkflowID        string
	VersionName       string
	Description       string
	StorageType       string
}

type DefaultRunSetting struct {
	RunTags    map[string]string
	RoleARN    string
	WorkflowID string
	Name       string
	OutputURI  string
	RunGroupID string
	Priority   int32
}

type Handler struct {
	Backend StorageBackend
}

type ImportJobFilter struct {
	Status    string
	StoreName string
}

type InMemoryBackend struct {
	// contains filtered or unexported fields
}

type InlineRunSetting struct {
	RunTags      map[string]string
	Priority     *int32
	RunSettingID string
	Name         string
	OutputURI    string
}

type MultipartReadSetUpload struct {
	CreationTime    time.Time         `json:"creationTime"`
	Tags            map[string]string `json:"tags"`
	UploadID        string            `json:"uploadId"`
	SequenceStoreID string            `json:"sequenceStoreId"`
	Name            string            `json:"name,omitempty"`
	SourceFileType  string            `json:"sourceFileType"`
	SampleID        string            `json:"sampleId"`
	SubjectID       string            `json:"subjectId"`
	// GeneratedFrom is real required MultipartReadSetUploadListItem's "generatedFrom"
	// (List element, types.go) despite being optional on CreateMultipartReadSetUploadOutput
	// -- present-but-empty (not omitted) is correct either way (gopherstack-r80d batch 7).
	GeneratedFrom string `json:"generatedFrom"`
	// ReferenceARN is real required CreateMultipartReadSetUploadOutput/
	// MultipartReadSetUploadListItem "referenceArn" (api_op_CreateMultipartReadSetUpload.go:82-85,
	// types.go) despite being an optional CreateMultipartReadSetUploadInput field --
	// previously omitempty dropped the key entirely whenever a caller didn't supply
	// one, which a real client decodes as a required-field-missing error
	// (gopherstack-r80d batch 7).
	ReferenceARN string `json:"referenceArn"`
	Description  string `json:"description,omitempty"`
}

type Provider struct{}

type ReadSetActivationJob struct {
	CreationTime    time.Time                    `json:"creationTime"`
	CompletionTime  *time.Time                   `json:"completionTime,omitempty"`
	ID              string                       `json:"id"`
	SequenceStoreID string                       `json:"sequenceStoreId"`
	Status          string                       `json:"status"`
	Sources         []ReadSetActivationJobSource `json:"sources"`
}

type ReadSetActivationJobSource struct {
	ReadSetID string `json:"readSetId"`
}

type ReadSetBatchError struct {
	ID      string `json:"id"`
	Code    string `json:"code"`
	Message string `json:"message"`
}

type ReadSetExportJob struct {
	CreationTime    time.Time                `json:"creationTime"`
	CompletionTime  *time.Time               `json:"completionTime,omitempty"`
	ID              string                   `json:"id"`
	SequenceStoreID string                   `json:"sequenceStoreId"`
	Destination     string                   `json:"destination"`
	Status          string                   `json:"status"`
	Sources         []ReadSetExportJobSource `json:"sources"`
}

type ReadSetExportJobSource struct {
	ReadSetID string `json:"readSetId"`
}

type ReadSetFilter struct {
	Name   string
	Status string
}

type ReadSetImportJob struct {
	CreationTime    time.Time                `json:"creationTime"`
	CompletionTime  *time.Time               `json:"completionTime,omitempty"`
	ID              string                   `json:"id"`
	SequenceStoreID string                   `json:"sequenceStoreId"`
	RoleARN         string                   `json:"roleArn"`
	Status          string                   `json:"status"`
	Sources         []ReadSetImportJobSource `json:"sources"`
}

type ReadSetImportJobSource struct {
	SourceFileType string `json:"sourceFileType"`
	SourceFiles    struct {
		Source1 string `json:"source1"`
		Source2 string `json:"source2,omitempty"`
	} `json:"sourceFiles"`
	SubjectID    string `json:"subjectId"`
	SampleID     string `json:"sampleId"`
	ReferenceARN string `json:"referenceArn"`
	Name         string `json:"name"`
	Description  string `json:"description"`
}

type ReadSetMetadata struct {
	CreationTime    time.Time         `json:"creationTime"`
	UpdateTime      time.Time         `json:"updateTime"`
	Files           map[string]any    `json:"files,omitempty"`
	Tags            map[string]string `json:"tags"`
	Arn             string            `json:"arn"`
	ID              string            `json:"id"`
	SequenceStoreID string            `json:"sequenceStoreId"`
	Name            string            `json:"name"`
	Description     string            `json:"description"`
	StatusMessage   string            `json:"statusMessage,omitempty"`
	Status          string            `json:"status"`
	// FileType is the real GetReadSetMetadataOutput/ReadSetListItem wire key
	// ("fileType") -- confirmed against the SDK deserializer. It was
	// previously (incorrectly) serialized as "sequenceType", a key that
	// doesn't exist anywhere in the real API surface.
	FileType     string `json:"fileType"`
	SubjectID    string `json:"subjectId"`
	SampleID     string `json:"sampleId"`
	ReferenceARN string `json:"referenceArn"`
}

type ReadSetUploadPart struct {
	LastUpdatedTime time.Time `json:"lastUpdatedTime"`
	Checksum        string    `json:"checksum"`
	Source          string    `json:"source"`
	PartNumber      int       `json:"partNumber"`
	PartSize        int64     `json:"partSize"`
}

type ReferenceFilter struct {
	Name string
}

type ReferenceImportJob struct {
	CreationTime     time.Time                  `json:"creationTime"`
	CompletionTime   *time.Time                 `json:"completionTime,omitempty"`
	ID               string                     `json:"id"`
	ReferenceStoreID string                     `json:"referenceStoreId"`
	RoleARN          string                     `json:"roleArn"`
	Status           string                     `json:"status"`
	Sources          []ReferenceImportJobSource `json:"sources"`
}

type ReferenceImportJobFilter struct {
	Status string
}

type ReferenceImportJobSource struct {
	SourceFile  string `json:"sourceFile"`
	Name        string `json:"name"`
	Description string `json:"description"`
}

type ReferenceMetadata struct {
	CreationTime     time.Time         `json:"creationTime"`
	UpdateTime       time.Time         `json:"updateTime"`
	Files            map[string]any    `json:"files,omitempty"`
	Tags             map[string]string `json:"tags"`
	Arn              string            `json:"arn"`
	ID               string            `json:"id"`
	ReferenceStoreID string            `json:"referenceStoreId"`
	Name             string            `json:"name"`
	Description      string            `json:"description"`
	Status           string            `json:"status"`
	MD5              string            `json:"md5"`
}

type ReferenceStore struct {
	CreationTime time.Time         `json:"creationTime"`
	SseConfig    map[string]any    `json:"sseConfig,omitempty"`
	S3Access     map[string]any    `json:"s3Access,omitempty"`
	Tags         map[string]string `json:"tags"`
	Arn          string            `json:"arn"`
	ID           string            `json:"id"`
	Name         string            `json:"name"`
	Description  string            `json:"description"`
}

type ReferenceStoreFilter struct {
	Name string
}

type Run struct {
	StartTime       *time.Time            `json:"startTime,omitempty"`
	StopTime        *time.Time            `json:"stopTime,omitempty"`
	StorageCapacity *int                  `json:"storageCapacity,omitempty"`
	CreationTime    time.Time             `json:"creationTime"`
	Configuration   *ConfigurationDetails `json:"configuration,omitempty"`
	Tags            map[string]string     `json:"tags"`
	Params          map[string]any        `json:"parameters"`
	Arn             string                `json:"arn"`
	ID              string                `json:"id"`
	Name            string                `json:"name"`
	WorkflowID      string                `json:"workflowId"`
	RoleARN         string                `json:"roleArn"`
	RunGroupID      string                `json:"runGroupId,omitempty"`
	// RunBatchID is serialized as "batchId" (real GetRunOutput/RunListItem
	// wire key -- confirmed against the SDK deserializer; there is no real
	// StartRunInput field to set this, it's populated internally by
	// DeleteRunsInBatch/ListRunsInBatch's caller association).
	RunBatchID string `json:"batchId,omitempty"`
	// RunSettingID mirrors the batch caller's InlineSetting.RunSettingId (real
	// StartRunBatch request field, see types.InlineSetting) so ListRunsInBatch can map
	// each created run back to the caller-supplied per-run configuration it came from.
	// Empty for runs started via plain StartRun (there is no such field on that op).
	RunSettingID   string `json:"runSettingId,omitempty"`
	NetworkingMode string `json:"networkingMode,omitempty"`
	RunOutputURI   string `json:"runOutputUri,omitempty"`
	// CacheID/CacheBehavior associate this run with a RunCache
	// (CreateRunCache/GetRunCache). CacheBehavior defaults to the referenced
	// cache's own CacheBehavior when a CacheID is given and this field is
	// omitted (real StartRunInput.CacheBehavior: "You had set the default
	// value when you created the cache").
	CacheID       string `json:"cacheId,omitempty"`
	CacheBehavior string `json:"cacheBehavior,omitempty"`
	// RetentionMode/ScratchStorageMode/StorageType/WorkflowType are stored
	// and echoed as documented defaults; this backend does not implement
	// RetentionMode=REMOVE's automatic eviction of old runs (it already
	// never auto-removes runs, which is what RETAIN, the default, already
	// describes) or WorkflowType=READY2RUN's public workflow catalog (only
	// PRIVATE workflows -- this backend's own workflow store -- exist here).
	RetentionMode       string `json:"retentionMode,omitempty"`
	ScratchStorageMode  string `json:"scratchStorageMode,omitempty"`
	StorageType         string `json:"storageType,omitempty"`
	WorkflowType        string `json:"workflowType,omitempty"`
	WorkflowVersionName string `json:"workflowVersionName,omitempty"`
	UUID                string `json:"uuid,omitempty"`
	Status              string `json:"status"`
	// contains filtered or unexported fields
}

type RunBatch struct {
	CreationTime  time.Time         `json:"creationTime"`
	SubmittedTime time.Time         `json:"submittedTime,omitzero"`
	ProcessedTime time.Time         `json:"processedTime,omitzero"`
	Tags          map[string]string `json:"tags"`
	Arn           string            `json:"arn"`
	ID            string            `json:"id"`
	UUID          string            `json:"uuid"`
	Name          string            `json:"name,omitempty"`
	WorkflowID    string            `json:"workflowId"`
	RoleARN       string            `json:"roleArn"`
	RunGroupID    string            `json:"runGroupId,omitempty"`
	OutputURI     string            `json:"outputUri,omitempty"`
	Status        string            `json:"status"`
	// TotalRuns is the number of constituent runs requested at submission time
	// (len(InlineSettings)). SubmissionSuccessCount/SubmissionFailureCount and
	// DeletedRunCount are one-time/monotonic outcomes of synchronous events
	// (submission at StartRunBatch, deletion at DeleteRunsInBatch) and are stored
	// directly rather than derived, since the Run rows they summarize either never
	// existed (failed submissions) or are removed entirely (deleted runs) -- there is
	// nothing left to recompute them from later. The remaining RunSummary counts
	// (pending/running/completed/cancelled/failed) change as runs progress and are
	// computed live from surviving Run rows by summarizeRunBatchLocked instead.
	TotalRuns              int32
	SubmissionSuccessCount int32
	SubmissionFailureCount int32
	DeletedRunCount        int32
}

type RunBatchFilter struct {
	Name       string
	RunGroupID string
	Status     string
}

type RunBatchSummary struct {
	PendingRunCount   int32
	RunningRunCount   int32
	CompletedRunCount int32
	CancelledRunCount int32
	FailedRunCount    int32
}

type RunCache struct {
	CreationTime    time.Time         `json:"creationTime"`
	Tags            map[string]string `json:"tags"`
	Arn             string            `json:"arn"`
	ID              string            `json:"id"`
	Name            string            `json:"name"`
	Description     string            `json:"description,omitempty"`
	CacheS3Location string            `json:"cacheS3Uri"`
	Status          string            `json:"status"`
	// CacheBehavior is the cache's own documented default behavior for runs
	// that use it and don't override CacheBehavior on StartRun (real
	// CreateRunCacheInput.CacheBehavior: "If you don't specify a value, the
	// default behavior is CACHE_ON_FAILURE").
	CacheBehavior string `json:"cacheBehavior,omitempty"`
}

type RunFilter struct {
	Name       string
	RunGroupID string
	BatchID    string
	Status     string
}

type RunGroup struct {
	CreationTime time.Time         `json:"creationTime"`
	Tags         map[string]string `json:"tags"`
	Arn          string            `json:"arn"`
	ID           string            `json:"id"`
	Name         string            `json:"name"`
	MaxCPUs      int               `json:"maxCpus"`
	MaxRuns      int               `json:"maxRuns"`
	MaxDuration  int               `json:"maxDuration"`
	MaxGPUs      int               `json:"maxGpus"`
}

type RunGroupFilter struct {
	Name string
}

type RunTask struct {
	StartTime    *time.Time `json:"startTime,omitempty"`
	StopTime     *time.Time `json:"stopTime,omitempty"`
	CreationTime time.Time  `json:"creationTime"`
	TaskID       string     `json:"taskId"`
	RunID        string     `json:"runId"`
	Name         string     `json:"name"`
	Status       string     `json:"status"`
	CPUs         int        `json:"cpus"`
	Memory       int        `json:"memory"`
	// contains filtered or unexported fields
}

type RunTaskFilter struct {
	Status string
}

type RunsInBatchFilter struct {
	RunID            string
	RunSettingID     string
	SubmissionStatus string
}

type S3AccessPolicy struct {
	UpdateTime       *time.Time `json:"updateTime,omitempty"`
	S3AccessPointARN string     `json:"s3AccessPointArn"`
	Policy           string     `json:"s3AccessPolicy"`
	StoreID          string     `json:"storeId,omitempty"`
	StoreType        string     `json:"storeType,omitempty"`
}

type SequenceStore struct {
	CreationTime  time.Time         `json:"creationTime"`
	UpdateTime    time.Time         `json:"updateTime"`
	SseConfig     map[string]any    `json:"sseConfig,omitempty"`
	S3Access      map[string]any    `json:"s3Access,omitempty"`
	Tags          map[string]string `json:"tags"`
	Arn           string            `json:"arn"`
	ID            string            `json:"id"`
	Name          string            `json:"name"`
	Description   string            `json:"description"`
	ETagAlgorithm string            `json:"eTagAlgorithm,omitempty"`
	Status        string            `json:"status"`
}

type SequenceStoreFilter struct {
	Name string
}

type Share struct {
	CreationTime        time.Time  `json:"creationTime"`
	UpdateTime          *time.Time `json:"updateTime,omitempty"`
	ShareID             string     `json:"shareId"`
	ResourceARN         string     `json:"resourceArn"`
	PrincipalSubscriber string     `json:"principalSubscriber"`
	Name                string     `json:"shareName"`
	Status              string     `json:"status"`
	// contains filtered or unexported fields
}

type ShareFilter struct {
	ResourceArns []string
	Status       []string
	Type         []string
}

type StartRunInput struct {
	StorageCapacity     *int
	Tags                map[string]string
	Params              map[string]any
	CacheID             string
	RetentionMode       string
	RunSettingID        string
	NetworkingMode      string
	RunOutputURI        string
	WorkflowID          string
	CacheBehavior       string
	RunBatchID          string
	ScratchStorageMode  string
	StorageType         string
	WorkflowType        string
	WorkflowVersionName string
	RunGroupID          string
	Name                string
	RoleARN             string
}

type StorageBackend interface {
	// ReferenceStore
	CreateReferenceStore(name, description string, tags map[string]string) (*ReferenceStore, error)
	DeleteReferenceStore(id string) error
	GetReferenceStore(id string) (*ReferenceStore, error)
	ListReferenceStores(
		filter *ReferenceStoreFilter,
		maxResults int,
		nextToken string,
	) ([]*ReferenceStore, string, error)

	// Reference
	DeleteReference(referenceStoreID, id string) error
	GetReferenceMetadata(referenceStoreID, id string) (*ReferenceMetadata, error)
	ListReferences(
		referenceStoreID string,
		filter *ReferenceFilter,
		maxResults int,
		nextToken string,
	) ([]*ReferenceMetadata, string, error)
	StartReferenceImportJob(
		referenceStoreID, roleARN string,
		sources []ReferenceImportJobSource,
	) (*ReferenceImportJob, error)
	GetReferenceImportJob(referenceStoreID, jobID string) (*ReferenceImportJob, error)
	ListReferenceImportJobs(
		referenceStoreID string,
		filter *ReferenceImportJobFilter,
		maxResults int,
		nextToken string,
	) ([]*ReferenceImportJob, string, error)

	// SequenceStore
	CreateSequenceStore(
		name, description, eTagAlgorithmFamily, accessLogLocation string,
		tags map[string]string,
	) (*SequenceStore, error)
	DeleteSequenceStore(id string) error
	GetSequenceStore(id string) (*SequenceStore, error)
	ListSequenceStores(
		filter *SequenceStoreFilter,
		maxResults int,
		nextToken string,
	) ([]*SequenceStore, string, error)
	UpdateSequenceStore(id, name, description string) (*SequenceStore, error)

	// ReadSet
	BatchDeleteReadSet(sequenceStoreID string, ids []string) ([]ReadSetBatchError, error)
	GetReadSetMetadata(sequenceStoreID, id string) (*ReadSetMetadata, error)
	ListReadSets(
		sequenceStoreID string,
		filter *ReadSetFilter,
		maxResults int,
		nextToken string,
	) ([]*ReadSetMetadata, string, error)
	StartReadSetActivationJob(
		sequenceStoreID string,
		sources []ReadSetActivationJobSource,
	) (*ReadSetActivationJob, error)
	GetReadSetActivationJob(sequenceStoreID, jobID string) (*ReadSetActivationJob, error)
	ListReadSetActivationJobs(
		sequenceStoreID string,
		maxResults int,
		nextToken string,
	) ([]*ReadSetActivationJob, string, error)
	StartReadSetExportJob(
		sequenceStoreID, destination string,
		sources []ReadSetExportJobSource,
	) (*ReadSetExportJob, error)
	GetReadSetExportJob(sequenceStoreID, jobID string) (*ReadSetExportJob, error)
	ListReadSetExportJobs(
		sequenceStoreID string,
		maxResults int,
		nextToken string,
	) ([]*ReadSetExportJob, string, error)
	StartReadSetImportJob(
		sequenceStoreID, roleARN string,
		sources []ReadSetImportJobSource,
	) (*ReadSetImportJob, error)
	GetReadSetImportJob(sequenceStoreID, jobID string) (*ReadSetImportJob, error)
	ListReadSetImportJobs(
		sequenceStoreID string,
		maxResults int,
		nextToken string,
	) ([]*ReadSetImportJob, string, error)

	// Multipart ReadSet Upload
	CreateMultipartReadSetUpload(
		sequenceStoreID, name, sourceFileType, sampleID, subjectID, generatedFrom, referenceARN, description string,
		tags map[string]string,
	) (*MultipartReadSetUpload, error)
	AbortMultipartReadSetUpload(sequenceStoreID, uploadID string) error
	CompleteMultipartReadSetUpload(sequenceStoreID, uploadID string) (*ReadSetMetadata, error)
	ListMultipartReadSetUploads(
		sequenceStoreID string,
		maxResults int,
		nextToken string,
	) ([]*MultipartReadSetUpload, string, error)
	ListReadSetUploadParts(
		sequenceStoreID, uploadID string,
		maxResults int,
		nextToken string,
	) ([]*ReadSetUploadPart, string, error)
	UploadReadSetPart(
		sequenceStoreID, uploadID string,
		partNumber int,
		partSource string,
		data []byte,
	) (string, error)
	GetReadSetBytes(sequenceStoreID, id string) ([]byte, error)
	GetReferenceBytes(referenceStoreID, id string) ([]byte, error)

	// RunGroup
	CreateRunGroup(
		name string,
		maxCPUs, maxRuns, maxDuration int,
		maxGPUs int,
		tags map[string]string,
	) (*RunGroup, error)
	DeleteRunGroup(id string) error
	GetRunGroup(id string) (*RunGroup, error)
	ListRunGroups(filter *RunGroupFilter, maxResults int, nextToken string) ([]*RunGroup, string, error)
	UpdateRunGroup(
		id, name string,
		maxCPUs, maxRuns, maxDuration int,
		maxGPUs int,
	) (*RunGroup, error)

	// Run
	StartRun(input StartRunInput) (*Run, error)
	CancelRun(id string) error
	DeleteRun(id string) error
	GetRun(id string) (*Run, error)
	ListRuns(filter *RunFilter, maxResults int, nextToken string) ([]*Run, string, error)
	GetRunTask(runID, taskID string) (*RunTask, error)
	ListRunTasks(
		runID string,
		filter *RunTaskFilter,
		maxResults int,
		nextToken string,
	) ([]*RunTask, string, error)

	// Workflow
	CreateWorkflow(input CreateWorkflowInput) (*Workflow, error)
	DeleteWorkflow(id string) error
	GetWorkflow(id string) (*Workflow, error)
	ListWorkflows(filter *WorkflowFilter, maxResults int, nextToken string) ([]*Workflow, string, error)
	UpdateWorkflow(id, name, description, storageType string, storageCapacity *int) error

	// AnnotationStore
	CreateAnnotationStore(
		name, storeFormat string,
		reference, sseConfig, storeOptions map[string]any,
		tags map[string]string,
	) (*AnnotationStore, error)
	DeleteAnnotationStore(name string) (*AnnotationStore, error)
	GetAnnotationStore(name string) (*AnnotationStore, error)
	ListAnnotationStores(
		filter *StoreStatusFilter,
		ids []string,
		maxResults int,
		nextToken string,
	) ([]*AnnotationStore, string, error)
	UpdateAnnotationStore(name, description string) (*AnnotationStore, error)
	StartAnnotationImportJob(
		destinationName, roleARN string,
		items []AnnotationImportItem,
		annotationFields map[string]string,
		formatOptions map[string]any,
		runLeftNormalization bool,
		versionName string,
	) (*AnnotationImportJob, error)
	GetAnnotationImportJob(jobID string) (*AnnotationImportJob, error)
	ListAnnotationImportJobs(
		filter *ImportJobFilter,
		ids []string,
		maxResults int,
		nextToken string,
	) ([]*AnnotationImportJob, string, error)
	CancelAnnotationImportJob(jobID string) error

	// AnnotationStoreVersion
	CreateAnnotationStoreVersion(
		name, versionName, description string,
		tags map[string]string,
	) (*AnnotationStoreVersion, error)
	DeleteAnnotationStoreVersions(name string, versionNames []string) ([]VersionDeleteError, error)
	GetAnnotationStoreVersion(name, versionName string) (*AnnotationStoreVersion, error)
	ListAnnotationStoreVersions(
		name string,
		filter *StoreStatusFilter,
		maxResults int,
		nextToken string,
	) ([]*AnnotationStoreVersion, string, error)
	UpdateAnnotationStoreVersion(
		name, versionName, description string,
	) (*AnnotationStoreVersion, error)

	// VariantStore
	CreateVariantStore(name string, reference, sseConfig map[string]any, tags map[string]string) (*VariantStore, error)
	DeleteVariantStore(name string) (*VariantStore, error)
	GetVariantStore(name string) (*VariantStore, error)
	ListVariantStores(
		filter *StoreStatusFilter,
		ids []string,
		maxResults int,
		nextToken string,
	) ([]*VariantStore, string, error)
	UpdateVariantStore(name, description string) (*VariantStore, error)
	StartVariantImportJob(
		destinationName, roleARN string,
		items []VariantImportItem,
		annotationFields map[string]string,
		runLeftNormalization bool,
	) (*VariantImportJob, error)
	GetVariantImportJob(jobID string) (*VariantImportJob, error)
	ListVariantImportJobs(
		filter *ImportJobFilter,
		ids []string,
		maxResults int,
		nextToken string,
	) ([]*VariantImportJob, string, error)
	CancelVariantImportJob(jobID string) error

	// Share
	CreateShare(resourceARN, principalSubscriber, name string) (*Share, error)
	AcceptShare(shareID string) (*Share, error)
	DeleteShare(shareID string) (*Share, error)
	GetShare(shareID string) (*Share, error)
	ListShares(
		resourceOwner string,
		filter *ShareFilter,
		maxResults int,
		nextToken string,
	) ([]*Share, string, error)

	// RunCache
	CreateRunCache(name, cacheS3Location, cacheBehavior string, tags map[string]string) (*RunCache, error)
	DeleteRunCache(id string) error
	GetRunCache(id string) (*RunCache, error)
	ListRunCaches(maxResults int, nextToken string) ([]*RunCache, string, error)
	UpdateRunCache(id, name, description, cacheBehavior string) error

	// RunBatch
	StartRunBatch(
		batchName string, def DefaultRunSetting, inlineSettings []InlineRunSetting, tags map[string]string,
	) (*RunBatch, error)
	CancelRunBatch(id string) error
	DeleteRunBatch(id string) error
	GetRunBatch(id string) (*RunBatch, error)
	GetRunBatchSummary(id string) (RunBatchSummary, error)
	ListRunBatches(filter *RunBatchFilter, maxResults int, nextToken string) ([]*RunBatch, string, error)
	DeleteRunsInBatch(batchID string) error
	ListRunsInBatch(
		batchID string,
		filter *RunsInBatchFilter,
		maxResults int,
		nextToken string,
	) ([]*Run, string, error)

	// Configuration
	CreateConfiguration(
		name, description string, runConfigurations *ConfigurationRunConfigurations, tags map[string]string,
	) (*Configuration, error)
	DeleteConfiguration(name string) error
	GetConfiguration(name string) (*Configuration, error)
	ListConfigurations(maxResults int, nextToken string) ([]*Configuration, string, error)

	// WorkflowVersion
	CreateWorkflowVersion(input CreateWorkflowVersionInput) (*WorkflowVersion, error)
	DeleteWorkflowVersion(workflowID, versionName string) error
	GetWorkflowVersion(workflowID, versionName string) (*WorkflowVersion, error)
	ListWorkflowVersions(
		workflowID string,
		filter *WorkflowVersionFilter,
		maxResults int,
		nextToken string,
	) ([]*WorkflowVersion, string, error)
	UpdateWorkflowVersion(workflowID, versionName, description, storageType string, storageCapacity *int) error

	// S3 Access Policy
	PutS3AccessPolicy(s3AccessPointARN, policy string) error
	GetS3AccessPolicy(s3AccessPointARN string) (*S3AccessPolicy, error)
	DeleteS3AccessPolicy(s3AccessPointARN string) error

	// Tags
	TagResource(resourceARN string, tags map[string]string) error
	UntagResource(resourceARN string, tagKeys []string) error
	ListTagsForResource(resourceARN string) (map[string]string, error)

	AccountID() string
	Region() string
	Reset()
	Snapshot(ctx context.Context) []byte
	Restore(ctx context.Context, data []byte) error
}

type StoreStatusFilter struct {
	Status string
}

type VariantImportItem struct {
	Source string `json:"source"`
}

type VariantImportItemDetail struct {
	JobStatus     string `json:"jobStatus"`
	Source        string `json:"source"`
	StatusMessage string `json:"statusMessage,omitempty"`
}

type VariantImportJob struct {
	CreationTime         time.Time                 `json:"creationTime"`
	CompletionTime       *time.Time                `json:"completionTime,omitempty"`
	UpdateTime           time.Time                 `json:"updateTime"`
	AnnotationFields     map[string]string         `json:"annotationFields,omitempty"`
	ID                   string                    `json:"id"`
	DestinationName      string                    `json:"destinationName"`
	RoleARN              string                    `json:"roleArn"`
	Status               string                    `json:"status"`
	StatusMessage        string                    `json:"statusMessage"`
	Items                []VariantImportItemDetail `json:"items"`
	RunLeftNormalization bool                      `json:"runLeftNormalization,omitempty"`
}

type VariantImportJobSummary struct {
	CreationTime         time.Time         `json:"creationTime"`
	CompletionTime       *time.Time        `json:"completionTime,omitempty"`
	UpdateTime           time.Time         `json:"updateTime"`
	AnnotationFields     map[string]string `json:"annotationFields,omitempty"`
	ID                   string            `json:"id"`
	DestinationName      string            `json:"destinationName"`
	RoleARN              string            `json:"roleArn"`
	Status               string            `json:"status"`
	RunLeftNormalization bool              `json:"runLeftNormalization,omitempty"`
}

type VariantStore struct {
	CreationTime time.Time      `json:"creationTime"`
	UpdateTime   time.Time      `json:"updateTime"`
	Reference    map[string]any `json:"reference,omitempty"`
	// SseConfig is real GetVariantStoreOutput/VariantStoreItem's required
	// "sseConfig" (types.go) -- previously not a field on this struct at
	// all, the same "member with no struct field" class as
	// AnnotationImportJob's pre-fix FormatOptions gap. CreateVariantStore
	// now threads the real (optional) CreateVariantStoreInput.SseConfig
	// through, mirroring AnnotationStore's existing convention
	// (gopherstack-r80d batch 7).
	SseConfig   map[string]any    `json:"sseConfig,omitempty"`
	Tags        map[string]string `json:"tags"`
	StoreArn    string            `json:"storeArn"`
	ID          string            `json:"id"`
	Name        string            `json:"name"`
	Description string            `json:"description"`
	Status      string            `json:"status"`
	// StatusMessage is real GetVariantStoreOutput's required
	// "statusMessage" -- previously absent from this struct entirely, the
	// same gap fixed for import jobs in c41d36cb6 but missed here. Always
	// empty: this backend transitions store status synchronously with no
	// error state to describe.
	StatusMessage string `json:"statusMessage"`
	// StoreSizeBytes is real GetVariantStoreOutput's required
	// "storeSizeBytes" (deserializers.go:11682). This backend does not track
	// actual stored bytes -- always 0 rather than a fabricated number.
	StoreSizeBytes int64 `json:"storeSizeBytes"`
	// contains filtered or unexported fields
}

type VariantStoreSummary struct {
	CreationTime   time.Time      `json:"creationTime"`
	UpdateTime     time.Time      `json:"updateTime"`
	Reference      map[string]any `json:"reference,omitempty"`
	SseConfig      map[string]any `json:"sseConfig,omitempty"`
	StoreArn       string         `json:"storeArn"`
	ID             string         `json:"id"`
	Name           string         `json:"name"`
	Description    string         `json:"description"`
	Status         string         `json:"status"`
	StatusMessage  string         `json:"statusMessage"`
	StoreSizeBytes int64          `json:"storeSizeBytes"`
}

type VersionDeleteError struct {
	VersionName string `json:"versionName"`
	Code        string `json:"code"`
	Message     string `json:"message"`
}

type Workflow struct {
	CreationTime time.Time         `json:"creationTime"`
	Tags         map[string]string `json:"tags"`
	// ParameterTemplate is stored/echoed only when explicitly supplied on
	// CreateWorkflow -- when blank, real AWS auto-parses it from the
	// workflow definition file, which this backend cannot honestly
	// simulate without parsing a real workflow archive (same restraint as
	// Engine's auto-detection, see PARITY.md).
	ParameterTemplate map[string]WorkflowParameter `json:"parameterTemplate,omitempty"`
	StorageCapacity   *int                         `json:"storageCapacity,omitempty"`
	Arn               string                       `json:"arn"`
	ID                string                       `json:"id"`
	Name              string                       `json:"name"`
	Description       string                       `json:"description"`
	Engine            string                       `json:"engine"`
	Type              string                       `json:"type,omitempty"`
	StorageType       string                       `json:"storageType,omitempty"`
	UUID              string                       `json:"uuid,omitempty"`
	Status            string                       `json:"status"`
	// contains filtered or unexported fields
}

type WorkflowFilter struct {
	Name string
	Type string
}

type WorkflowParameter struct {
	Description string `json:"description,omitempty"`
	Optional    bool   `json:"optional,omitempty"`
}

type WorkflowVersion struct {
	CreationTime      time.Time                    `json:"creationTime"`
	Tags              map[string]string            `json:"tags"`
	ParameterTemplate map[string]WorkflowParameter `json:"parameterTemplate,omitempty"`
	StorageCapacity   *int                         `json:"storageCapacity,omitempty"`
	Arn               string                       `json:"arn"`
	WorkflowID        string                       `json:"workflowId"`
	VersionName       string                       `json:"versionName"`
	Description       string                       `json:"description"`
	Engine            string                       `json:"engine,omitempty"`
	Type              string                       `json:"type,omitempty"`
	StorageType       string                       `json:"storageType,omitempty"`
	Status            string                       `json:"status"`
	// contains filtered or unexported fields
}

type WorkflowVersionFilter struct {
	Type string
}