interpro

type APIResponse struct {
	Count    int      `json:"count"`
	Next     *string  `json:"next"`
	Previous *string  `json:"previous"`
	Results  []Result `json:"results"`
}

type CompletedJob struct {
	JobID  string
	SeqID  string
	Client ioehttp.Client
	Config ScanRequest
}

type ExtractConfig = T.Tuple3[ioehttp.Client, string, string]

type FetchConfig = T.Tuple2[ioehttp.Client, string]

type Metadata struct {
	Accession      string         `json:"accession"`
	Name           string         `json:"name"`
	SourceDatabase string         `json:"source_database"`
	Length         int            `json:"length"`
	SourceOrganism SourceOrganism `json:"source_organism"`
	Gene           string         `json:"gene"`
	InAlphafold    bool           `json:"in_alphafold"`
	InBfvd         bool           `json:"in_bfvd"`
}

type PageStep = T.Tuple2[string, string]

type Result struct {
	Metadata Metadata `json:"metadata"`
	Taxa     []Taxon  `json:"taxa"`
}

type RuntimeState = T.Tuple4[ioehttp.Client, string, string, *os.File]

type ScanRequest struct {
	FastaPath    string
	Email        string
	OutputDir    string
	SeqType      string
	BaseURL      string
	PollInterval time.Duration
	Timeout      time.Duration
}

type SourceOrganism struct {
	TaxID          string `json:"taxId"`
	ScientificName string `json:"scientificName"`
	FullName       string `json:"fullName"`
}

type SubmitArgs = T.Tuple2[ioehttp.Client, ScanRequest]

type SubmitInput = T.Tuple3[ioehttp.Client, ScanRequest, seqio.Fasta]

type SubmittedJob struct {
	JobID  string
	SeqID  string
	Client ioehttp.Client
	Config ScanRequest
}

type Taxon struct {
	Accession      string   `json:"accession"`
	Lineage        []string `json:"lineage"`
	SourceDatabase string   `json:"source_database"`
}

type WriteConfig = T.Tuple3[*os.File, string, string]