align

type Alignment interface {
	AddSequence(name string, sequence string, comment string) error
	AddSequenceChar(name string, sequence []rune, comment string) error
	GetSequence(name string) (string, bool)
	GetSequenceChar(ith int) ([]rune, bool)
	GetSequenceName(ith int) (string, bool)
	Iterate(it func(name string, sequence string))
	IterateChar(it func(name string, sequence []rune))
	NbSequences() int
	Length() int
	ShuffleSequences()
	ShuffleSites(rate float64)
	Sample(nb int) (Alignment, error)
	BuildBootstrap() Alignment
	Swap(rate float64)
	Recombine(rate float64, lenprop float64)
	TrimNames(size int) (map[string]string, error)
	TrimSequences(trimsize int, fromStart bool) error
	CharStats() map[rune]int64
	Alphabet() int
}

type Sequence interface {
	Sequence() string
	SequenceChar() []rune
	Name() string
	Comment() string
}