context

package
v0.4.0 Latest Latest
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 Go to latest Published: Nov 4, 2021 License: MIT Imports: 1 Imported by: 0

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Index

Constants

This section is empty.

Variables

View Source 
var RankStr = map[Rank]string{
	Empty:        "empty",
	Unknown:      "unknown",
	SubSpecies:   "subspecies",
	Species:      "species",
	SuperSpecies: "superspecies",
	SubGenus:     "subgenus",
	Genus:        "genus",
	SuperGenus:   "supergenus",
	SubFamily:    "subfamily",
	Family:       "family",
	SuperFamily:  "superfamily",
	Order:        "order",
	SuperOrder:   "superorder",
	ParvClass:    "parvclass",
	SubTerClass:  "subterclass",
	InfraClass:   "infraclass",
	SubClass:     "subclass",
	Class:        "class",
	SuperClass:   "superclass",
	SubPhylum:    "subphylum",
	Phylum:       "phylum",
	SuperPhylum:  "superphylum",
	SubKingdom:   "subkingdom",
	Kingdom:      "kingdom",
	SuperKingdom: "superkingdom",
	Empire:       "empire",
	Biota:        "biota",
}
View Source 
var StrRank = func() map[string]Rank {
	res := make(map[string]Rank)
	for k, v := range RankStr {
		res[v] = k
	}
	return res
}()

Functions

func AddRank 

func AddRank(cs []Clade)

Types

type Clade 

type Clade struct {
	ID, Name, RankStr string
	Rank
}

type Context 

type Context struct {
	Kingdom, Context     *Clade
	KingdomPC, ContextPC float32
}

func CalcContext 

func CalcContext(
	h []Hierarch,
	threshold float32,
) Context

CalcContext takes several items that include bio-clasification and returns back the kingdom where most of items belong to (if rank 'kingdom' is provided), percentage of how many items belong to that kingdom, and the highest ranking clade that includes a certain percentage of species. The percentage is provided via threshold parameter.

The algorithm assumes that all items belong to the same classification tree and that classification does not skip clades from item to item.

type Hierarch 

type Hierarch interface {
	Clades() []Clade
}

type Rank 

type Rank int
const (
	Empty Rank = iota
	Unknown
	SubSpecies
	Species
	SuperSpecies
	SubGenus
	Genus
	SuperGenus
	SubFamily
	Family
	SuperFamily
	Order
	SuperOrder
	ParvClass
	SubTerClass
	InfraClass
	SubClass
	Class
	SuperClass
	SubPhylum
	Phylum
	SuperPhylum
	SubKingdom
	Kingdom
	SuperKingdom
	Empire
	Biota
)

func NewRank 

func NewRank(s string) Rank

func (Rank) Index 

func (r Rank) Index() int

func (Rank) String 

func (r Rank) String() string

Source Files

View all Source files

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