annotate

var Command = &cli.Command{
	Name:   "annotate",
	Usage:  "Replace citation references in markdown files with formatted citation links",
	Action: annotate,
	Flags: append([]cli.Flag{
		&cli.StringFlag{
			Name:        "gedcom",
			Aliases:     []string{"g"},
			Usage:       "GEDCOM file to read from",
			Destination: &opts.gedcomFile,
		},
		&cli.StringFlag{
			Name:        "gramps",
			Usage:       "Gramps xml file to read from",
			Destination: &opts.grampsFile,
		},
		&cli.StringFlag{
			Name:        "gramps-dbname",
			Usage:       "Name of the gramps database, used to keep IDs consistent between versions of the same database",
			Destination: &opts.grampsDatabaseName,
		},
		&cli.StringFlag{
			Name:        "config",
			Aliases:     []string{"c"},
			Usage:       "Path to a KDL tree configuration file",
			Required:    true,
			Destination: &opts.treeConfig,
		},
		&cli.StringFlag{
			Name:        "dir",
			Aliases:     []string{"d"},
			Usage:       "Path to the folder of markdown files to annotate",
			Destination: &opts.markdownDir,
			Required:    true,
		},
		&cli.BoolFlag{
			Name:        "dry-run",
			Aliases:     []string{"n"},
			Usage:       "List changes without modifying files",
			Destination: &opts.dryRun,
		},
		&cli.BoolFlag{
			Name:        "undo",
			Usage:       "Restore original footnote references, removing generated citations",
			Destination: &opts.undo,
		},
		&cli.StringFlag{
			Name:        "basepath",
			Aliases:     []string{"b"},
			Usage:       "Base URL path for the tree site, used to generate citation links",
			Value:       "/",
			Destination: &opts.basePath,
		},
	}, logging.Flags...),
}