cmd

type BioC struct {
	Version string
}

type BuildPackageChanInfo struct {
	BuildStatus    string
	OutputLocation string
	Err            error
}

type CacheInfo struct {
	Path   string
	Length int64
}

type DownloadInfo struct {
	// if statusCode > 0 it is identical to HTTP status code from download, or 200 in case of successful
	// git repository clone
	// message field contains URL of the package
	// statusCode == -1 means that package version could not be found in any BioConductor repository
	// message field contains error message
	// statusCode == -2 means that there was an error during cloning of GitHub repository
	// message field contains error message
	// statusCode == -3 means that there was an error during cloning of GitLab repository
	// message field contains error message
	// statusCode == -4 means that a network error occurred during HTTP download
	// message field contains URL of the package
	StatusCode    int    `json:"statusCode"`
	Message       string `json:"message"`
	ContentLength int64  `json:"contentLength"`
	// file where the package is stored, or directory where git repository has been cloned
	// empty in case of errors
	OutputLocation string `json:"outputLocation"`
	// number of bytes saved thanks to caching (size of cached package file)
	SavedBandwidth int64 `json:"savedBandwidth"`
	// possible values: tar.gz, git, bioconductor,
	// tgz in case of binary macOS packages,
	// zip in case of binary Windows packages,
	// or empty value in case of error
	DownloadedPackageType string `json:"downloadedPackageType"`
	PackageName           string `json:"packageName"`
	PackageVersion        string `json:"packageVersion"`
	// Contains git SHA of cloned package, or exceptionally git tag or branch, if SHA was not provided in renv.lock.
	GitPackageShaOrRef string `json:"gitPackageShaOrRef"`
	// Name of R package repository ("Repository" renv.lock field, e.g. CRAN, RSPM) in case package
	// source ("Source" renv.lock field) is "Repository".
	// Otherwise, "GitHub" or "GitLab" depending on "Source" renv.lock field.
	// Empty in case of errors.
	PackageRepository string `json:"packageRepository"`
}

type DownloadedPackage struct {
	PackageType       string
	PackageVersion    string
	PackageRepository string
	Location          string
}

type ExecRCmdInstallChanInfo struct {
	Output string
	Err    error
}

type InstallResultInfo struct {
	PackageName      string `json:"packageName"`
	InputLocation    string `json:"inputLocation"`
	PackageType      string `json:"packageType"`
	PackageVersion   string `json:"packageVersion"`
	Status           string `json:"status"`
	LogFilePath      string `json:"logFilePath"`
	BuildStatus      string `json:"buildStatus"`
	BuildLogFilePath string `json:"buildLogFilePath"`
}

type ItemCheckInfo struct {
	CheckItemType    string // NOTE, WARNING or ERROR
	CheckItemContent string // content of NOTE, WARNING or ERROR
}

type PackageCheckInfo struct {
	PackagePath         string // path to directory where the package has been installed
	PackageName         string
	LogFilePath         string // path to the file containing log of R CMD check for the package
	MostSevereCheckItem string // OK, NOTE, WARNING or ERROR
	Info                []ItemCheckInfo
	CheckTime           int
	ShouldFail          bool // Whether a NOTE or WARNING occurred that would cause the check to fail.
}

type PackageInfo struct {
	Version  string
	Checksum string
}

type PackagesData struct {
	PackageName        string `json:"packageName"`
	PackageVersion     string `json:"packageVersion"`
	GitPackageShaOrRef string `json:"gitPackageShaOrRef"`
	DownloadStatusText string `json:"downloadStatusText"`
	InstallStatusText  string `json:"installStatusText"`
	CheckStatusText    string `json:"checkStatusText"`
	BuildStatusText    string `json:"buildStatusText"`
	CheckTime          string `json:"checkTime"`
	PackageRepository  string `json:"packageRepository"`
}

type RenvInfo struct {
	RenvFilename string `json:"renvFilename"`
	RenvContents string `json:"renvContents"`
}

type Renvlock struct {
	R            Rversion
	Bioconductor BioC
	Packages     map[string]Rpackage
}

type ReportInfo struct {
	PackagesInformation []PackagesData `json:"packagesInformation"`
	SystemInformation   *SystemInfo    `json:"systemInformation"`
	RenvInformation     RenvInfo       `json:"renvInformation"`
	TotalCheckTime      string         `json:"totalCheckTime"`
}

type Rpackage struct {
	Package      string
	Version      string
	Source       string
	Repository   string
	Hash         string
	RemoteType   string   `json:",omitempty"`
	Requirements []string `json:",omitempty"`
	// Below 'Remote' properties only exist in renv.lock
	// if package comes from git repository.
	RemoteHost     string `json:",omitempty"`
	RemoteRepo     string `json:",omitempty"`
	RemoteUsername string `json:",omitempty"`
	RemoteRef      string `json:",omitempty"`
	RemoteSha      string `json:",omitempty"`
	RemoteSubdir   string `json:",omitempty"`
}

type Rrepository struct {
	Name string
	URL  string
}

type Rversion struct {
	Version      string
	Repositories []Rrepository
}

type SystemInfo struct {
	OperatingSystem string `json:"operatingSystem"`
	Architecture    string `json:"architecture"`
	KernelVersion   string `json:"kernelVersion"`
	PrettyName      string `json:"prettyName"`
	SystemPackages  string `json:"systemPackages"`
	RVersion        string `json:"rVersion"`
	Time            string `json:"time"`
	EnvVariables    string `json:"envVariables"`
	Hostname        string `json:"hostname"`
}

type SystemMetrics struct {
	ElapsedTimeSeconds      float64 `csv:"elapsed_time_seconds" json:"elapsed_time_seconds"`
	RProcessesMemory        uint64  `csv:"r_processes_memory" json:"r_processes_memory"`
	ChromiumProcessesMemory uint64  `csv:"chromium_processes_memory" json:"chromium_processes_memory"`
	ScribeMemory            uint64  `csv:"scribe_memory" json:"scribe_memory"`
	OthersMemory            uint64  `csv:"others_memory" json:"others_memory"`
	TotalMemoryUsed         uint64  `csv:"total_memory_used" json:"total_memory_used"`
	SystemMemoryUsed        uint64  `csv:"system_memory_used" json:"system_memory_used"`
	SystemMemoryFree        uint64  `csv:"system_memory_free" json:"system_memory_free"`
	NumberOfGoroutines      int     `csv:"number_of_goroutines" json:"number_of_goroutines"`
	Load1                   float64 `csv:"load_1" json:"load_1"`
	Load5                   float64 `csv:"load_5" json:"load_5"`
	Load15                  float64 `csv:"load_15" json:"load_15"`
}