Documentation
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Overview ¶
Package diffusion implements an spherical diffusion approximated using a discrete isolatitude pixelation for a phylogenetic biogeography analysis.
Index ¶
Constants ¶
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Variables ¶
This section is empty.
Functions ¶
Types ¶
type Param ¶
type Param struct { // Paleolandscape model Landscape *model.TimePix // Stage rotation model Rot *model.StageRot // Distance matrix DM *earth.DistMat // Pixel priors PP pixprob.Pixel // Ranges is the collection of terminal ranges Ranges *ranges.Collection // Length in years of the stem node Stem int64 // Lambda is the concentration parameter per million years // in 1/radian units Lambda float64 }
Param is a collection of parameters for the initialization of a tree.
type Tree ¶
type Tree struct {
// contains filtered or unexported fields
}
A Tree os a phylogenetic tree for biogeography.
func (*Tree) LogLike ¶
LogLike returns the logLikelihood of the whole reconstruction in the most basal stem node.
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