The highest tagged major version is v4.

quantRunner

package

v3.4.233 Latest Latest Go to latest Published: Dec 15, 2023 License: Apache-2.0 Imports: 16 Imported by: 0

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Repository

github.com/pixlise/core

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Documentation ¶

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Overview ¶

Exposes interfaces and structures required to run PIQUANT in the Kubernetes cluster along with functions to access quantification files, logs, results and summaries of quant jobs.

Index ¶

func EstimateNodeCount(spectraCount int32, elementCount int32, desiredRunTimeSec int32, ...) int32
func FilesPerNode(spectraCount int32, nodeCount int32) int32
type PiquantParams
type QuantRunner
- func GetQuantRunner(name string) (QuantRunner, error)

Constants ¶

This section is empty.

Variables ¶

This section is empty.

Functions ¶

func EstimateNodeCount ¶

func EstimateNodeCount(spectraCount int32, elementCount int32, desiredRunTimeSec int32, coresPerNode int32, maxNodes int32) int32

func FilesPerNode ¶

func FilesPerNode(spectraCount int32, nodeCount int32) int32

Types ¶

type PiquantParams ¶

type PiquantParams struct {
	RunTimeEnv        string   `json:"runtimeEnv"`
	JobID             string   `json:"jobId"`
	JobsPath          string   `json:"jobsPath"`
	DatasetPath       string   `json:"datasetPath"`
	DetectorConfig    string   `json:"detectorConfig"`
	Elements          []string `json:"elements"`
	Parameters        string   `json:"parameters"`
	DatasetsBucket    string   `json:"datasetsBucket"`
	ConfigBucket      string   `json:"configBucket"`
	PiquantJobsBucket string   `json:"jobBucket"`
	QuantName         string   `json:"name"`
	PMCListName       string   `json:"pmcListName"`
	Command           string   `json:"command"`
}

PiquantParams - Parameters for running piquant, as generated by PIXLISE API

type QuantRunner ¶

type QuantRunner interface {
	// Requires the instance count. If PMC files are named node0001.pmcs to node0003.pmcs, instances
	// should be 4, start with 1-based counting for host names
	RunPiquant(piquantDockerImage string, params PiquantParams, pmcListNames []string, cfg config.APIConfig, requestorUserId string, log logger.ILogger) error
}

func GetQuantRunner ¶

func GetQuantRunner(name string) (QuantRunner, error)

Source Files ¶

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