cmd

package
v0.1.2 Latest Latest
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 Go to latest Published: Mar 13, 2016 License: MIT Imports: 24 Imported by: 0

Documentation

Index

Constants

This section is empty.

Variables

View Source 
var RootCmd = &cobra.Command{
	Use:   "fakit",
	Short: "FASTA kit",
	Long: `fakit -- FASTA kit

Version: 0.1.2

Author: Wei Shen <shenwei356@gmail.com>

Documents  : http://shenwei356.github.io/fakit
Source code: https://github.com/shenwei356/fakit

`,
}

RootCmd represents the base command when called without any subcommands

Functions

func Execute 

func Execute()

Execute adds all child commands to the root command sets flags appropriately. This is called by main.main(). It only needs to happen once to the rootCmd.

func MD5 

func MD5(s []byte) string

MD5 of a slice

Types

type LocationChunk 

type LocationChunk struct {
	ID   uint64
	Data []LocationInfo
}

LocationChunk is LocationChunk

type LocationInfo 

type LocationInfo struct {
	Record      *fasta.FastaRecord
	PatternName string
	Strand      int
	Locations   [][]int
}

LocationInfo is LocationInfo

Source Files

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