gdc-cli

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Published: Jun 15, 2026 License: Apache-2.0

README

gdc

A command line for gdc.

gdc is a single pure-Go binary. It reads public gdc data over plain HTTPS, shapes it into clean records, and prints output that pipes into the rest of your tools. No API key, nothing to run alongside it.

The same package is also a resource-URI driver, so a host program like ant can address gdc as gdc:// URIs.

Install

go install github.com/tamnd/gdc-cli/cmd/gdc@latest

Or grab a prebuilt binary from the releases, or run the container image:

docker run --rm ghcr.io/tamnd/gdc:latest --help

Usage

gdc page <path>                      # fetch one page as a record
gdc page <path> -o json              # as JSON, ready for jq
gdc page <path> --template '{{.Body}}'  # just the readable body text
gdc links <path>                     # the pages it links to, one per line
gdc --help                           # the whole command tree

Every command shares one output contract: -o table|json|jsonl|csv|tsv|url|raw, --fields to pick columns, --template for a custom line, and -n to limit. The default adapts to where output goes (a table on a terminal, JSONL in a pipe), so the same command reads well by hand and parses cleanly downstream.

This is a fresh scaffold. It ships one example resource type, page, wired end to end. Model the real gdc records in gdc/ and declare their operations in gdc/domain.go; each one becomes a command, an HTTP route, and an MCP tool at once.

Serve it

The same operations are available over HTTP and as an MCP tool set for agents, with no extra code:

gdc serve --addr :7777    # GET /v1/page/<path>  returns NDJSON
gdc mcp                   # speak MCP over stdio

Use it as a resource-URI driver

gdc registers a gdc domain the way a program registers a database driver with database/sql. A host enables it with one blank import:

import _ "github.com/tamnd/gdc-cli/gdc"

Then ant (or any program that links the package) dereferences gdc:// URIs without knowing anything about gdc:

ant get gdc://page/<path>   # fetch the record
ant cat gdc://page/<path>   # just the body text
ant ls  gdc://page/<path>   # the pages it links to, each addressable
ant url gdc://page/<path>   # the live https URL

Development

cmd/gdc/   thin main: hands cli.NewApp to kit.Run
cli/                 assembles the kit App from the gdc domain
gdc/                the library: HTTP client, data models, and domain.go (the driver)
docs/                tago documentation site
make build      # ./bin/gdc
make test       # go test ./...
make vet        # go vet ./...

Releasing

Push a version tag and GitHub Actions runs GoReleaser, which builds the archives, Linux packages, the multi-arch GHCR image, checksums, SBOMs, and a cosign signature:

git tag v0.1.0
git push --tags

The Homebrew and Scoop steps self-disable until their tokens exist, so the first release works with no extra secrets.

License

Apache-2.0. See LICENSE.

Directories

Path Synopsis
Package cli assembles the gdc command tree from the gdc domain on top of the any-cli/kit framework.
Package cli assembles the gdc command tree from the gdc domain on top of the any-cli/kit framework.
cmd
gdc command
Command gdc is a single-binary command line for gdc.
Command gdc is a single-binary command line for gdc.
Package gdc is the library behind the gdc command line: the HTTP client, request shaping, and the typed data models for the NCI Genomic Data Commons (GDC), which indexes cancer genomics data: 50k+ cases, 1.27M files, 3.3M mutations across 91 cancer projects.
Package gdc is the library behind the gdc command line: the HTTP client, request shaping, and the typed data models for the NCI Genomic Data Commons (GDC), which indexes cancer genomics data: 50k+ cases, 1.27M files, 3.3M mutations across 91 cancer projects.

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