sra-cli

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Published: Jun 15, 2026 License: Apache-2.0

README

sra

A command line for sra.

sra is a single pure-Go binary. It reads public sra data over plain HTTPS, shapes it into clean records, and prints output that pipes into the rest of your tools. No API key, nothing to run alongside it.

The same package is also a resource-URI driver, so a host program like ant can address sra as sra:// URIs.

Install

go install github.com/tamnd/sra-cli/cmd/sra@latest

Or grab a prebuilt binary from the releases, or run the container image:

docker run --rm ghcr.io/tamnd/sra:latest --help

Usage

sra page <path>                      # fetch one page as a record
sra page <path> -o json              # as JSON, ready for jq
sra page <path> --template '{{.Body}}'  # just the readable body text
sra links <path>                     # the pages it links to, one per line
sra --help                           # the whole command tree

Every command shares one output contract: -o table|json|jsonl|csv|tsv|url|raw, --fields to pick columns, --template for a custom line, and -n to limit. The default adapts to where output goes (a table on a terminal, JSONL in a pipe), so the same command reads well by hand and parses cleanly downstream.

This is a fresh scaffold. It ships one example resource type, page, wired end to end. Model the real sra records in sra/ and declare their operations in sra/domain.go; each one becomes a command, an HTTP route, and an MCP tool at once.

Serve it

The same operations are available over HTTP and as an MCP tool set for agents, with no extra code:

sra serve --addr :7777    # GET /v1/page/<path>  returns NDJSON
sra mcp                   # speak MCP over stdio

Use it as a resource-URI driver

sra registers a sra domain the way a program registers a database driver with database/sql. A host enables it with one blank import:

import _ "github.com/tamnd/sra-cli/sra"

Then ant (or any program that links the package) dereferences sra:// URIs without knowing anything about sra:

ant get sra://page/<path>   # fetch the record
ant cat sra://page/<path>   # just the body text
ant ls  sra://page/<path>   # the pages it links to, each addressable
ant url sra://page/<path>   # the live https URL

Development

cmd/sra/   thin main: hands cli.NewApp to kit.Run
cli/                 assembles the kit App from the sra domain
sra/                the library: HTTP client, data models, and domain.go (the driver)
docs/                tago documentation site
make build      # ./bin/sra
make test       # go test ./...
make vet        # go vet ./...

Releasing

Push a version tag and GitHub Actions runs GoReleaser, which builds the archives, Linux packages, the multi-arch GHCR image, checksums, SBOMs, and a cosign signature:

git tag v0.1.0
git push --tags

The Homebrew and Scoop steps self-disable until their tokens exist, so the first release works with no extra secrets.

License

Apache-2.0. See LICENSE.

Directories

Path Synopsis
Package cli assembles the sra command tree from the sra domain on top of the any-cli/kit framework.
Package cli assembles the sra command tree from the sra domain on top of the any-cli/kit framework.
cmd
sra command
Command sra is a single-binary command line for sra.
Command sra is a single-binary command line for sra.
Package sra is the library behind the sra command line: the HTTP client, request shaping, and the typed data models for NCBI SRA.
Package sra is the library behind the sra command line: the HTTP client, request shaping, and the typed data models for NCBI SRA.

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