fetch

package

v1.47.0 Latest Latest Go to latest Published: Oct 26, 2026 License: BSD-2-Clause Imports: 25 Imported by: 0

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Valid go.mod file
Redistributable license
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Stable version
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Repository

github.com/dictyBase/graphql-server

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Documentation ¶

Index ¶

Constants
Variables
func FetchAndBuildAnnotations(params *FetchAndBuildAnnotationsParams) ([]*models.GOAnnotation, error)
func FetchPublication(_ context.Context, repo repository.Repository, id string) (*models.Publication, error)
func GetResp(rawURL string) (*http.Response, error)
func NewPublication(p *PublicationParams) IOE.IOEither[error, *Publication]
type FetchAndBuildAnnotationsParams
type Publication
- func (p *Publication) FetchCachedArticle(repo repository.Repository, id string) IOE.IOEither[error, *models.Publication]
type PublicationParams

Constants ¶

View Source

const (
	RedisKey = "PUBLICATION_KEY"
)

Variables ¶

View Source

var Status = "published"

Functions ¶

func FetchAndBuildAnnotations ¶

func FetchAndBuildAnnotations(
	params *FetchAndBuildAnnotationsParams,
) ([]*models.GOAnnotation, error)

func FetchPublication ¶

func FetchPublication(
	_ context.Context,
	repo repository.Repository,
	id string,
) (*models.Publication, error)

FetchPublication fetches a publication by PMID or DOI using Redis caching and the literature NCBI and EuropePMC clients.

func GetResp ¶

func GetResp(rawURL string) (*http.Response, error)

func NewPublication ¶ added in v1.47.0

func NewPublication(
	p *PublicationParams,
) IOE.IOEither[error, *Publication]

NewPublication builds the publication source with both NCBI PubMed and EuropePMC clients.

Types ¶

type FetchAndBuildAnnotationsParams ¶

type FetchAndBuildAnnotationsParams struct {
	Ctx       context.Context
	Gene      string
	UniprotID string
	Redis     repository.Repository
	Logger    *logrus.Entry
}

type Publication ¶

type Publication struct {
	// contains filtered or unexported fields
}

Publication resolves PMIDs (NCBI first, EuropePMC fallback) and DOIs (EuropePMC) into GraphQL publication models.

func (*Publication) FetchCachedArticle ¶ added in v1.47.0

func (p *Publication) FetchCachedArticle(
	repo repository.Repository,
	id string,
) IOE.IOEither[error, *models.Publication]

FetchCachedArticle normalizes and validates id, checks Redis when repo is non-nil, and fetches from NCBI/EuropePMC on a cache miss.

type PublicationParams ¶ added in v1.47.0

type PublicationParams struct {
	APIKey string
	Tool   string
	Email  string
}

PublicationParams carries optional NCBI and EuropePMC request identity values.

Source Files ¶

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